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The structure of predicted metal-dependent hydrolase from Bacillus stearothermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 295 Tris-HCl, ammonium sulphate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 4.34 71.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.434 α = 90 b = 118.434 β = 90 c = 123.542 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2003-04-21 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD CUSTOM-MADE 2003-06-22 M SINGLE WAVELENGTH 3 1 x-ray 100 CCD CUSTOM-MADE 2003-08-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 1.2814 APS 19-BM 2 SYNCHROTRON APS BEAMLINE 19-ID 0.9196 APS 19-ID 3 SYNCHROTRON APS BEAMLINE 19-ID 0.9999 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 2.5 35 99.9 0.072 0.072 34.6 6.5 31141 31051 -3 40
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.54 100 0.833 0.833 2.72 5 1528
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.5 35 -3 28996 28996 1534 98.27 0.17757 0.17757 0.17559 0.2033 0.21521 0.2359 RANDOM 40
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.92 1.92 -3.84
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 10.636 r_dihedral_angle_1_deg 9.042 r_scbond_it 7.958 r_mcangle_it 7.48 r_mcbond_it 5.643 r_angle_refined_deg 1.796 r_angle_other_deg 0.865 r_symmetry_vdw_other 0.307 r_symmetry_hbond_refined 0.287 r_nbd_other 0.271
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 10.636 r_dihedral_angle_1_deg 9.042 r_scbond_it 7.958 r_mcangle_it 7.48 r_mcbond_it 5.643 r_angle_refined_deg 1.796 r_angle_other_deg 0.865 r_symmetry_vdw_other 0.307 r_symmetry_hbond_refined 0.287 r_nbd_other 0.271 r_nbd_refined 0.245 r_xyhbond_nbd_refined 0.198 r_chiral_restr 0.121 r_nbtor_other 0.096 r_symmetry_vdw_refined 0.086 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_gen_planes_other 0.007 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3253 Nucleic Acid Atoms Solvent Atoms 247 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SnB phasing MLPHARE phasing DM phasing ARP/wARP model building