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Crystal Structure of human Tyro3-D1D2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 HEPES, sodium cacodylate, magnesium acetate, PEG2000, DTT, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.74 55.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.55 α = 90 b = 109.55 β = 90 c = 62.47 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE RIGAKU RAXIS IV 2002-05-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 0.9766, 0.9762, 0.9252
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 100 97.8 0.043 30568
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 82.9 0.277
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.96 30 27788 2775 100 0.21286 0.20855 0.2147 0.25635 0.2609 RANDOM 37.269
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.38 -0.69 -1.38 2.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.814 r_scangle_it 4.82 r_scbond_it 3.053 r_mcangle_it 2.264 r_angle_refined_deg 1.402 r_mcbond_it 1.312 r_angle_other_deg 0.829 r_symmetry_hbond_refined 0.311 r_symmetry_vdw_refined 0.3 r_symmetry_vdw_other 0.272
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.814 r_scangle_it 4.82 r_scbond_it 3.053 r_mcangle_it 2.264 r_angle_refined_deg 1.402 r_mcbond_it 1.312 r_angle_other_deg 0.829 r_symmetry_hbond_refined 0.311 r_symmetry_vdw_refined 0.3 r_symmetry_vdw_other 0.272 r_nbd_other 0.245 r_xyhbond_nbd_refined 0.198 r_metal_ion_refined 0.188 r_nbd_refined 0.179 r_chiral_restr 0.086 r_nbtor_other 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2682 Nucleic Acid Atoms Solvent Atoms 275 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement XDS data scaling SOLVE phasing RESOLVE phasing