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Structure of pag5_736 from P. aerophilum with three disulphide bonds
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 PEG 8000, lithium sulphate, acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.35 47.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.483 α = 90 b = 43.717 β = 113.24 c = 52.717 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2003-06-06 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 2003-07-12 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418 2 SYNCHROTRON ALS BEAMLINE 8.2.2 1.1271 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.6 90 96 0.125 28068 28068
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.6 1.66 75 0.495 2174
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.6 28.63 26648 26648 1409 95.69 0.18665 0.18665 0.18409 0.23507 RANDOM 30.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.53 -1.46 2.69 -2.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.855 r_scangle_it 5.596 r_scbond_it 3.494 r_angle_other_deg 2.508 r_mcangle_it 2.416 r_angle_refined_deg 2.27 r_mcbond_it 1.368 r_symmetry_vdw_other 0.284 r_symmetry_vdw_refined 0.256 r_nbd_other 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.855 r_scangle_it 5.596 r_scbond_it 3.494 r_angle_other_deg 2.508 r_mcangle_it 2.416 r_angle_refined_deg 2.27 r_mcbond_it 1.368 r_symmetry_vdw_other 0.284 r_symmetry_vdw_refined 0.256 r_nbd_other 0.24 r_nbd_refined 0.207 r_symmetry_hbond_refined 0.199 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.111 r_nbtor_other 0.094 r_bond_refined_d 0.024 r_gen_planes_refined 0.01 r_gen_planes_other 0.01 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1614 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELXD phasing MLPHARE phasing DM phasing CNS refinement