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Crystal Structure of Thi1 protein from Arabidopsis thaliana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 291 TES, magnesium chloride, MES, MPD, heptane-1,2,3-triol, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.01 38.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.356 α = 90 b = 133.147 β = 90 c = 142.301 γ = 90
Symmetry Space Group F 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.28269, 0.915013 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 70.71 99.4 0.042 16.3 8.2 63420 63420
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 93.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 70.71 1 63818 60207 3213 99.38 0.181 0.14072 0.13914 0.1433 0.17063 RANDOM 12.736
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 0.52 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.239 r_scangle_it 6.216 r_scbond_it 4.556 r_mcangle_it 3.267 r_mcbond_it 2.174 r_angle_refined_deg 1.915 r_angle_other_deg 1.664 r_symmetry_vdw_other 0.318 r_symmetry_vdw_refined 0.27 r_nbd_other 0.263
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.239 r_scangle_it 6.216 r_scbond_it 4.556 r_mcangle_it 3.267 r_mcbond_it 2.174 r_angle_refined_deg 1.915 r_angle_other_deg 1.664 r_symmetry_vdw_other 0.318 r_symmetry_vdw_refined 0.27 r_nbd_other 0.263 r_symmetry_hbond_refined 0.26 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.2 r_chiral_restr 0.148 r_nbtor_other 0.095 r_metal_ion_refined 0.039 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4135 Nucleic Acid Atoms Solvent Atoms 438 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling SOLVE phasing