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Crystal Structure of the Insulin Receptor Kinase in Complex with the SH2 Domain of APS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GAG PDB ENTRIES 1GAG, 1RPY experimental model PDB 1RPY PDB ENTRIES 1GAG, 1RPY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.57 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.216 α = 90 b = 96.443 β = 90 c = 121.993 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD 2003-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.8 0.039 22.4 4.8 32437
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.69 99.4 0.164
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1GAG, 1RPY 2.6 30 32303 31446 1556 97.3 0.229 0.229 0.2264 0.277 RANDOM 49.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.9 5.4 2.5
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.9 c_mcangle_it 2.31 c_scbond_it 1.95 c_angle_deg 1.45 c_mcbond_it 1.33 c_improper_angle_d 0.803 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.9 c_mcangle_it 2.31 c_scbond_it 1.95 c_angle_deg 1.45 c_mcbond_it 1.33 c_improper_angle_d 0.803 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6149 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms 72
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing CNS refinement