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Crystal Structure of dodecameric FMN-dependent Ubix-like Decarboxylase from Escherichia coli O157:H7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 295 15% PEG 4K, 0.2M Lithium sulphate, 0.1M Hepes (7.0), VAPOR DIFFUSION, HANGING DROP, temperature 22K
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.372 α = 90 b = 95.372 β = 90 c = 217.538 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Mirrors 2003-04-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 0.9786, 0.9792, 0.9643 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 0.066 12.9 56350 46319
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.15 85.6 0.377
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 19.32 46319 42181 4137 100 0.18012 0.17648 0.1781 0.21557 0.2162 RANDOM 26.862
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.708 r_dihedral_angle_1_deg 5.11 r_scangle_it 2.092 r_scbond_it 1.407 r_angle_refined_deg 1.108 r_mcangle_it 0.942 r_mcbond_it 0.793 r_symmetry_hbond_refined 0.226 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.179
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.708 r_dihedral_angle_1_deg 5.11 r_scangle_it 2.092 r_scbond_it 1.407 r_angle_refined_deg 1.108 r_mcangle_it 0.942 r_mcbond_it 0.793 r_symmetry_hbond_refined 0.226 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.179 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.069 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5426 Nucleic Acid Atoms Solvent Atoms 458 Heterogen Atoms 124
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing CNS refinement