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Crystal Structure of Human Triggering Receptor Expressed on Myeloid Cells 1 (TREM-1) at 1.47 .
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.3 277 PEG 4000, Sodium Tartrate, pH 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 277K, pH 6.30
Crystal Properties Matthews coefficient Solvent content 3.24 61.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.937 α = 90 b = 110.937 β = 90 c = 46.835 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 118 CCD ADSC QUANTUM 4 SINGLE CRYSTAL, CYLINDRICALLY BENT, SI(220), A FRONT END, VERTICALLY COLLIMATING PREMIRROR, DOUBLE-CRYSTAL SILICON (111) MONOCHROMATOR WITH A FIXED-HEIGHT EXIT BEAM, TOROIDAL FOCUSING MIRROR 2003-06-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.0000, 0.9795, 0.9797, 0.9537 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.47 22.03 96.7 0.057 46.3 4.2 55408 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.47 1.51 0.452 3 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.47 22.03 52572 2798 0.193 0.1983 0.206 0.2112 RANDOM 18.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.09 -0.18 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.414 r_scangle_it 3.748 r_scbond_it 2.324 r_mcangle_it 1.552 r_angle_refined_deg 1.545 r_mcbond_it 0.824 r_angle_other_deg 0.812 r_symmetry_vdw_other 0.333 r_nbd_other 0.25 r_symmetry_vdw_refined 0.217
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.414 r_scangle_it 3.748 r_scbond_it 2.324 r_mcangle_it 1.552 r_angle_refined_deg 1.545 r_mcbond_it 0.824 r_angle_other_deg 0.812 r_symmetry_vdw_other 0.333 r_nbd_other 0.25 r_symmetry_vdw_refined 0.217 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.125 r_chiral_restr 0.098 r_symmetry_hbond_refined 0.081 r_nbtor_other 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1824 Nucleic Acid Atoms Solvent Atoms 175 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing