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Crystal Structure Analysis of Bovine Bc1 with Methoxy Acrylate Stilbene (MOAS)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QCR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.2 277 20mM ammonium acetate, 20% glycerol, 12% PEG4000,
0.5M KCl, 0.1% diheptanoyl-phosphatidylcholine
, pH 7.2, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.66 66.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.677 α = 90 b = 153.677 β = 90 c = 598.824 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2001-01-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B 1.736 NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 67802 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.08 90.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1QCR 3 50 67802 67802 2113 96.84 0.2302 0.22815 0.29485 RANDOM 27.643
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.01 2.01 -4.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 21.105 r_scangle_it 7.512 r_scbond_it 5.099 r_mcangle_it 2.406 r_angle_refined_deg 1.851 r_mcbond_it 0.508 r_symmetry_hbond_refined 0.198 r_nbd_refined 0.181 r_chiral_restr 0.169 r_xyhbond_nbd_refined 0.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 21.105 r_scangle_it 7.512 r_scbond_it 5.099 r_mcangle_it 2.406 r_angle_refined_deg 1.851 r_mcbond_it 0.508 r_symmetry_hbond_refined 0.198 r_nbd_refined 0.181 r_chiral_restr 0.169 r_xyhbond_nbd_refined 0.142 r_symmetry_vdw_refined 0.138 r_bond_refined_d 0.023 r_gen_planes_refined 0.019 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16527 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 178
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing