1SSU
Structural and biochemical evidence for disulfide bond heterogeneity in active forms of the somatomedin B domain of human vitronectin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | N15-labeled protein 20 mM sodium phosphate pH 7.5 | 90% H2O/10% D2O | 180 mM | 7.5 | 1 atm | 293 | |
2 | 2D TOCSY | N15-labeled protein 20 mM sodium phosphate pH 7.5 | 90% H2O/10% D2O | 180 mM | 7.5 | 1 atm | 293 | |
3 | 3D_15N-separated_NOESY | N15-labeled protein 20 mM sodium phosphate pH 7.5 | 90% H2O/10% D2O | 180 mM | 7.5 | 1 atm | 293 | |
4 | 2D NOESY | unlabeled protein 20 mM sodium phosphate pH 7.5 | 90% H2O/10% D2O | 180 mM | 7.5 | 1 atm | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | DRX | 750 |
3 | Bruker | AVANCE | 900 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics in DYANA followed by simulated annealing and energy minimization in AMBER | DYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | 20 lowest energy structures |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | not applicable |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | DYANA | 1.5 | Peter Guntert |
2 | structure solution | Amber | 7 | D. Case, D. Pearlman et al. |
3 | processing | NMRPipe | 2003 | DeLaglio, F. |
4 | data analysis | NMRView | 4.1.3 | Bruce Johnson |
5 | refinement | Amber | 7 | D. Case, D. Pearlman et al. |