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Crystal structure of ProX from Archeoglobus fulgidus in complex with glycine betaine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SW1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 291 PEG 1500, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.04 39.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.9 α = 90 b = 75.9 β = 90 c = 88.4 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9774 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99.8 0.108 10.8 15622 15622 2 2 40.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.2 100 0.547 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1SW1 2.1 50 15622 14849 771 99.79 0.20315 0.20315 0.20091 0.2123 0.2487 0.222 RANDOM 36.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 1.04 -2.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.561 r_scangle_it 3.448 r_scbond_it 2.033 r_mcangle_it 1.452 r_angle_refined_deg 1.429 r_angle_other_deg 0.853 r_mcbond_it 0.778 r_symmetry_hbond_refined 0.336 r_symmetry_vdw_other 0.24 r_nbd_other 0.229
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.561 r_scangle_it 3.448 r_scbond_it 2.033 r_mcangle_it 1.452 r_angle_refined_deg 1.429 r_angle_other_deg 0.853 r_mcbond_it 0.778 r_symmetry_hbond_refined 0.336 r_symmetry_vdw_other 0.24 r_nbd_other 0.229 r_symmetry_vdw_refined 0.212 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.092 r_nbtor_other 0.087 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2161 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling MOLREP phasing