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Crystal structure of ProX from Archeoglobus fulgidus in the ligand free form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SW1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 291 magnesium chloride, Tris, PEG 4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.99 38.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 161.5 α = 90 b = 56.5 β = 110.6 c = 116.1 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9778 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.6 0.077 10.7 90922 90922 2 2 26.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 99.8 0.332 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1SW1 1.8 50 90922 86386 4551 99.75 0.18785 0.18785 0.18642 0.1986 0.21439 0.2239 RANDOM 19.597
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 0.42 0.35 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.047 r_scangle_it 4.049 r_scbond_it 2.393 r_mcangle_it 1.534 r_angle_refined_deg 1.364 r_angle_other_deg 0.825 r_mcbond_it 0.822 r_symmetry_hbond_refined 0.286 r_symmetry_vdw_other 0.243 r_nbd_other 0.229
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.047 r_scangle_it 4.049 r_scbond_it 2.393 r_mcangle_it 1.534 r_angle_refined_deg 1.364 r_angle_other_deg 0.825 r_mcbond_it 0.822 r_symmetry_hbond_refined 0.286 r_symmetry_vdw_other 0.243 r_nbd_other 0.229 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.179 r_xyhbond_nbd_refined 0.146 r_metal_ion_refined 0.089 r_chiral_restr 0.085 r_nbtor_other 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8644 Nucleic Acid Atoms Solvent Atoms 327 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling MOLREP phasing