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Reduced bovine superoxide dismutase at pH 5.0 complexed with thiocyanate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SXC PDB ENTRY 1SXC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 excess nitrogen atmosphere 5 20 % PEG6K, 20MM HEPES, 100MM NASCN, PH 5.0, SODIUM DITHIONITE (EXCESS), NITROGEN ATMOSPHERE, excess nitrogen atmosphere
Crystal Properties Matthews coefficient Solvent content 4.5 73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.6 α = 90 b = 197.5 β = 90 c = 50.8 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 IMAGE PLATE MARRESEARCH MIRRORS 1996-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 10 96.9 0.076 8 4 200034
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.03 90.7 0.264 3.6 3
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1SXC 2 10 34111 34111 96.9 0.175
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 34.62 p_special_tor 15 p_staggered_tor 13.624 p_scangle_it 6.937 p_scbond_it 4.442 p_mcangle_it 3.281 p_mcbond_it 2.739 p_planar_tor 1.703 p_multtor_nbd 0.252 p_singtor_nbd 0.196
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 34.62 p_special_tor 15 p_staggered_tor 13.624 p_scangle_it 6.937 p_scbond_it 4.442 p_mcangle_it 3.281 p_mcbond_it 2.739 p_planar_tor 1.703 p_multtor_nbd 0.252 p_singtor_nbd 0.196 p_chiral_restr 0.179 p_planar_d 0.045 p_angle_d 0.027 p_bond_d 0.019 p_plane_restr 0.018 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2146 Nucleic Acid Atoms Solvent Atoms 345 Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing CCP4 refinement