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4-Chlorobenzoyl-CoA Ligase/Synthetase unliganded, selenomethionine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 277 6-8% PEG 4000; 10% glycerol; 0.25 M CaCl2; 50 mM CHES, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.84 56.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.979 α = 90 b = 124.979 β = 90 c = 69.001 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD BRANDEIS - B4 2003-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C 0.950038 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25 100 0.085 9.1 5.6 41528 41528 25.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 99.7 0.516 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.002 25 39426 39426 2102 98.72 0.18428 0.18314 0.1837 0.20578 0.2091 RANDOM 16.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.07 0.54 1.07 -1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.159 r_scangle_it 2.47 r_scbond_it 1.506 r_angle_refined_deg 1.062 r_mcangle_it 0.814 r_mcbond_it 0.415 r_symmetry_vdw_refined 0.198 r_nbd_refined 0.187 r_symmetry_hbond_refined 0.156 r_metal_ion_refined 0.152
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.159 r_scangle_it 2.47 r_scbond_it 1.506 r_angle_refined_deg 1.062 r_mcangle_it 0.814 r_mcbond_it 0.415 r_symmetry_vdw_refined 0.198 r_nbd_refined 0.187 r_symmetry_hbond_refined 0.156 r_metal_ion_refined 0.152 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.07 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3736 Nucleic Acid Atoms Solvent Atoms 340 Heterogen Atoms 1
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SnB phasing PHASES phasing REFMAC refinement