1TOT
ZZ Domain of CBP- a Novel Fold for a Protein Interaction Module
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 2.3 mM solutions in degassed 10 mM Tris-d11 pH 6.8, 200 M ZnCl2, 10 mM DTT-d10, 0.05% w/v sodium azide | 94 % H2O, 6 % D2O | 10 mM | 6.8 | ambient | 298 | |
2 | 3D_15N-separated_NOESY | 2.3 mM solutions in degassed 10 mM Tris-d11 pH 6.8, 200 M ZnCl2, 10 mM DTT-d10, 0.05% w/v sodium azide | 94 % H2O, 6 % D2O | 10 mM | 6.8 | ambient | 298 | |
3 | HBHA(CCCO)NH TOSCY | 2.3 mM solutions in degassed 10 mM Tris-d11 pH 6.8, 200 M ZnCl2, 10 mM DTT-d10, 0.05% w/v sodium azide | 94 % H2O, 6 % D2O | 10 mM | 6.8 | ambient | 298 | |
4 | CCONH TOCSY | 2.3 mM solutions in degassed 10 mM Tris-d11 pH 6.8, 200 M ZnCl2, 10 mM DTT-d10, 0.05% w/v sodium azide | 94 % H2O, 6 % D2O | 10 mM | 6.8 | ambient | 298 | |
5 | HCCH TOSCSY | 2.3 mM solutions in degassed 10 mM Tris-d11 pH 6.8, 200 M ZnCl2, 10 mM DTT-d10, 0.05% w/v sodium azide | 94 % H2O, 6 % D2O | 10 mM | 6.8 | ambient | 298 | |
6 | HCCH COSY | 2.3 mM solutions in degassed 10 mM Tris-d11 pH 6.8, 200 M ZnCl2, 10 mM DTT-d10, 0.05% w/v sodium azide | 94 % H2O, 6 % D2O | 10 mM | 6.8 | ambient | 298 | |
7 | HNCO | 2.3 mM solutions in degassed 10 mM Tris-d11 pH 6.8, 200 M ZnCl2, 10 mM DTT-d10, 0.05% w/v sodium azide | 94 % H2O, 6 % D2O | 10 mM | 6.8 | ambient | 298 | |
8 | HN(CA)CO | 2.3 mM solutions in degassed 10 mM Tris-d11 pH 6.8, 200 M ZnCl2, 10 mM DTT-d10, 0.05% w/v sodium azide | 94 % H2O, 6 % D2O | 10 mM | 6.8 | ambient | 298 | |
9 | CBCACONH | 2.3 mM solutions in degassed 10 mM Tris-d11 pH 6.8, 200 M ZnCl2, 10 mM DTT-d10, 0.05% w/v sodium azide | 94 % H2O, 6 % D2O | 10 mM | 6.8 | ambient | 298 | |
10 | HNCACB | 2.3 mM solutions in degassed 10 mM Tris-d11 pH 6.8, 200 M ZnCl2, 10 mM DTT-d10, 0.05% w/v sodium azide | 94 % H2O, 6 % D2O | 10 mM | 6.8 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | AMX | 500 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics and simulated annealing | The calculated structures are based on a total of 1846 NOEs, and include duplicate NOEs. 441 intraresidue, 328 sequential, 157 medium range, 386 long range, 534 ambigous, 5 defined hydrogen bonds from H/D exchange and 29 Phi and 29 Psi constraints and 22 Chi1 constraints. | DYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 3D homonuclear techniques, and by Cd113 NMR of a cadmium substituted sample to confirm metal coordinating ligands and coordinating atoms. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | DYANA | 1.0 | Guntert |
2 | data analysis | SANE | 1.0 | Duggan |
3 | structure solution | Amber | 8.0 | Case |
4 | processing | NMRPipe | 1.0 | Delaglio |
5 | data analysis | NMRView | 5.04 | Johnson |
6 | refinement | Amber | 8.0 | Case |