1U6L

Crystal structure of protein PA1353 from Pseudomonas aeruginosa


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.529330% PEG 6000, 1M Lithium Chloride, 0.1M sodium Acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.7855.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.579α = 90
b = 76.294β = 90
c = 82.193γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray70CCDMARRESEARCH2004-06-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID0.97900APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8200.111912111
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.899.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.8120908543499.780.19990.197090.25712RANDOM37.815
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.8-0.98-0.82
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.171
r_dihedral_angle_4_deg22.335
r_dihedral_angle_3_deg20.733
r_sphericity_free8.692
r_scangle_it8.599
r_dihedral_angle_1_deg7.868
r_mcangle_it7.178
r_scbond_it5.923
r_sphericity_bonded5.148
r_mcbond_it5.043
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.171
r_dihedral_angle_4_deg22.335
r_dihedral_angle_3_deg20.733
r_sphericity_free8.692
r_scangle_it8.599
r_dihedral_angle_1_deg7.868
r_mcangle_it7.178
r_scbond_it5.923
r_sphericity_bonded5.148
r_mcbond_it5.043
r_rigid_bond_restr4.789
r_angle_refined_deg2.533
r_symmetry_vdw_refined0.411
r_symmetry_hbond_refined0.374
r_nbtor_refined0.35
r_nbd_refined0.289
r_xyhbond_nbd_refined0.269
r_chiral_restr0.155
r_bond_refined_d0.031
r_gen_planes_refined0.01
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1985
Nucleic Acid Atoms
Solvent Atoms243
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
SCALEPACKdata scaling
SOLVEphasing