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Crystallographic structure of APC35852
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RW7 PDB entry 1RW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.9 293 0.2M magnesium sulfate heptahydrate, 20% w/v PEG 3350, pH 5.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.4 48.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.183 α = 90 b = 66.183 β = 90 c = 53.905 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD CUSTOM-MADE 2004-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97970 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 50 96.2 0.236 53.7 8.7 47601 49550 -3 23.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.4 72.8 0.368 4.1 3715
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1RW7 1.35 15 -3 49550 46862 2484 96.52 0.1734 0.1734 0.17215 0.172 0.19729 0.1959 RANDOM 21.848
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 -0.33 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.256 r_dihedral_angle_4_deg 18.739 r_dihedral_angle_3_deg 12.306 r_dihedral_angle_1_deg 6.03 r_scangle_it 3.79 r_scbond_it 2.839 r_angle_refined_deg 1.849 r_mcangle_it 1.753 r_mcbond_it 1.467 r_angle_other_deg 0.896
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.256 r_dihedral_angle_4_deg 18.739 r_dihedral_angle_3_deg 12.306 r_dihedral_angle_1_deg 6.03 r_scangle_it 3.79 r_scbond_it 2.839 r_angle_refined_deg 1.849 r_mcangle_it 1.753 r_mcbond_it 1.467 r_angle_other_deg 0.896 r_mcbond_other 0.374 r_symmetry_vdw_other 0.331 r_symmetry_vdw_refined 0.313 r_chiral_restr 0.291 r_nbd_refined 0.237 r_symmetry_hbond_refined 0.223 r_nbtor_refined 0.184 r_nbd_other 0.181 r_xyhbond_nbd_refined 0.174 r_nbtor_other 0.086 r_symmetry_hbond_other 0.02 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1723 Nucleic Acid Atoms Solvent Atoms 187 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction DENZO data reduction SCALEPACK data scaling MOLREP phasing