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Crystal structure of the PH domain of PKB alpha in complex with a sulfate molecule
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H10 PDB ENTRY 1H10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.1 M TRIS (8.5) 0.2 M AMMONIUM SULFATE, pH 8.50
Crystal Properties Matthews coefficient Solvent content 1.44 30
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.727 α = 90 b = 33.963 β = 119.85 c = 42.275 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2002-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 15 96.2 0.073 21.5 4.3 27697
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.29 74.6 0.394 2.7 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT PDB ENTRY 1H10 1.25 20 26794 902 93 0.1714 0.173 0.1822 0.226 0.2249 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 6 767.7 995.24
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.087 s_similar_adp_cmpnt 0.062 s_non_zero_chiral_vol 0.039 s_from_restr_planes 0.0303 s_zero_chiral_vol 0.028 s_angle_d 0.019 s_anti_bump_dis_restr 0.013 s_bond_d 0.005 s_rigid_bond_adp_cmpnt 0.002 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 956 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms 5
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling SHELX phasing