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Crystal Structure of the antiflavivirus Fab4g2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YEC PDB ENTRY 1YEC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 13% PEG8K, 100MM HEPES PH=7.5, 5MM B-OG, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.564 α = 90 b = 89.611 β = 90 c = 138.136 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC CCD 2003-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 74.536 97 0.091 0.091 5.9 4.9 60545 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 83.9 0.291 1.7 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1YEC 2 74.54 56177 4293 96.91 0.20087 0.19943 0.2127 0.21953 RANDOM 13.835
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.72 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 11.908 r_scangle_it 2.879 r_scbond_it 1.636 r_angle_refined_deg 1.278 r_mcangle_it 1.156 r_angle_other_deg 0.783 r_mcbond_it 0.585 r_symmetry_vdw_other 0.289 r_nbd_other 0.251 r_symmetry_hbond_refined 0.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 11.908 r_scangle_it 2.879 r_scbond_it 1.636 r_angle_refined_deg 1.278 r_mcangle_it 1.156 r_angle_other_deg 0.783 r_mcbond_it 0.585 r_symmetry_vdw_other 0.289 r_nbd_other 0.251 r_symmetry_hbond_refined 0.212 r_nbd_refined 0.175 r_symmetry_vdw_refined 0.169 r_xyhbond_nbd_refined 0.13 r_nbtor_other 0.083 r_chiral_restr 0.077 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6530 Nucleic Acid Atoms Solvent Atoms 473 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing