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Udp-galactopyranose mutase from Mycobacterium tuberculosis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1I8T PDB ENTRY 1I8T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 0.1M BICINE PH9.0, 1.6M AMMONIUM SULPHATE, 277K, pH 9.00
Crystal Properties Matthews coefficient Solvent content 4 69.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 137.601 α = 90 b = 153.733 β = 90 c = 137.688 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC CCD MIRRORS 2002-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 24.5 89 0.1 3.3 6.2 1188969
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.37 85.2 0.61 1.1 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1I8T 2.25 15 115830 6208 88.4 0.227 0.225 0.2408 0.266 0.272 RANDOM 41.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 0.48 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.992 r_dihedral_angle_4_deg 19.199 r_dihedral_angle_3_deg 18.997 r_dihedral_angle_1_deg 6.57 r_scangle_it 2.77 r_scbond_it 1.777 r_angle_refined_deg 1.543 r_mcangle_it 1.162 r_mcbond_it 0.707 r_symmetry_hbond_refined 0.403
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.992 r_dihedral_angle_4_deg 19.199 r_dihedral_angle_3_deg 18.997 r_dihedral_angle_1_deg 6.57 r_scangle_it 2.77 r_scbond_it 1.777 r_angle_refined_deg 1.543 r_mcangle_it 1.162 r_mcbond_it 0.707 r_symmetry_hbond_refined 0.403 r_symmetry_vdw_refined 0.312 r_nbtor_refined 0.309 r_nbd_refined 0.227 r_xyhbond_nbd_refined 0.189 r_chiral_restr 0.109 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12648 Nucleic Acid Atoms Solvent Atoms 1021 Heterogen Atoms 223
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling AMoRE phasing