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The crystal structure of AzoR (Azo Reductase) from Escherichia coli: Oxidized form
Crystallization Crystal Properties Matthews coefficient Solvent content 2.34 47.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.185 α = 90 b = 92.185 β = 90 c = 51.848 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 4 2000-06-23 M SINGLE WAVELENGTH 2 1 CCD ADSC QUANTUM 4 2000-06-25 3 1 CCD MARRESEARCH 2002-03-25
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 1.00 Photon Factory BL-6A 2 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.00 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 64.55 20095
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.8 21.95 20095 1091 99.59 0.19424 0.19215 0.2033 0.23426 0.2397 RANDOM 18.767
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 0.74 -1.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.646 r_dihedral_angle_1_deg 6.043 r_scangle_it 4.556 r_scbond_it 3.021 r_mcangle_it 1.968 r_angle_refined_deg 1.963 r_mcbond_it 1.255 r_angle_other_deg 1.062 r_nbd_other 0.262 r_symmetry_vdw_other 0.223
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.646 r_dihedral_angle_1_deg 6.043 r_scangle_it 4.556 r_scbond_it 3.021 r_mcangle_it 1.968 r_angle_refined_deg 1.963 r_mcbond_it 1.255 r_angle_other_deg 1.062 r_nbd_other 0.262 r_symmetry_vdw_other 0.223 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.169 r_xyhbond_nbd_other 0.157 r_chiral_restr 0.13 r_symmetry_vdw_refined 0.109 r_nbtor_other 0.088 r_symmetry_hbond_refined 0.067 r_bond_refined_d 0.024 r_bond_other_d 0.021 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1493 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing