1VHB
BACTERIAL DIMERIC HEMOGLOBIN FROM VITREOSCILLA STERCORARIA
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION | 6.4 | PRECIPITANT: AMMONIUM SULFATE 1.2 M. BUFFER: PYROPHOSPHATE 0.2 M PH 6.4. ADDITIVES: ETHYLENE GLYCOL 3% V/V. PROTEIN CONCENTRATION 25 MG/ML. VAPOR DIFFUSION TECHNIQUES., vapor diffusion |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.3 | 48 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 63.32 | α = 90 |
b = 41.42 | β = 106.17 |
c = 62.94 | γ = 90 |
Symmetry | |
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Space Group | P 1 21 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 298 | IMAGE PLATE | MARRESEARCH | 1996-02-28 | M |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | LURE BEAMLINE DW21B | LURE | DW21B |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||||
1 | 1.83 | 25 | 94.9 | 0.055 | 0.36 | 12.9 | 3.5 | 26582 | 1 | 35 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | R-Sym I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | ||||||||||
1.83 | 1.88 | 61 | 0.36 | 0.36 | 2 | 1.9 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free Selection Details | Mean Isotropic B | ||||||
X-RAY DIFFRACTION | SIR-DENSITY MODIFICATION | A POSTERIORI | 1.83 | 15 | 27040 | 27040 | 1100 | 95 | 0.184 | 0.18 | 0.25 | EVERY 24TH REFLECTION |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
t_dihedral_angle_d | 13.148 |
t_it | 4.478 |
t_angle_deg | 1.788 |
t_nbd | 0.043 |
t_gen_planes | 0.017 |
t_trig_c_planes | 0.015 |
t_bond_d | 0.011 |
t_incorr_chiral_ct | |
t_pseud_angle |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 2042 |
Nucleic Acid Atoms | |
Solvent Atoms | 119 |
Heterogen Atoms | 86 |
Software
Software | |
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Software Name | Purpose |
SCALEIT | model building |
SHELX90 | model building |
MLPHARE | phasing |
SOLOMON | phasing |
DM | model building |
GLRF | phasing |
NCSMASK | model building |
TNT | refinement |
MOSFLM | data reduction |
CCP4 | data scaling |
ROTAVATA | data scaling |
SCALEIT | phasing |
SHELX-90 | phasing |
DM | phasing |
NCSMASK | phasing |