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Crystal structure of putative 2-phosphosulfolactate phosphatase (15026306) from Clostridium acetobutylicum at 2.6 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7.5 277 20.0% PEG-8000, 0.1M HEPES pH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.33 46.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.686 α = 90 b = 69.193 β = 90 c = 453.518 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2004-09-19 M MAD 2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.020035,0.979834 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 50 85.39 0.048 24.38 4.5 22838 50.62
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.53 29.22 0.153 3.19 1.34 377
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.49 38.7 21601 1159 85.47 0.19201 0.18994 0.1973 0.22938 0.229 RANDOM 38.679
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.6 -0.27 -3.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.539 r_dihedral_angle_4_deg 19.575 r_dihedral_angle_3_deg 16.541 r_dihedral_angle_1_deg 5.772 r_scangle_it 2.733 r_scbond_it 1.741 r_angle_refined_deg 1.509 r_mcangle_it 0.874 r_angle_other_deg 0.829 r_mcbond_it 0.821
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.539 r_dihedral_angle_4_deg 19.575 r_dihedral_angle_3_deg 16.541 r_dihedral_angle_1_deg 5.772 r_scangle_it 2.733 r_scbond_it 1.741 r_angle_refined_deg 1.509 r_mcangle_it 0.874 r_angle_other_deg 0.829 r_mcbond_it 0.821 r_symmetry_hbond_refined 0.26 r_symmetry_vdw_other 0.231 r_nbd_refined 0.211 r_nbtor_refined 0.18 r_nbd_other 0.172 r_mcbond_other 0.166 r_xyhbond_nbd_refined 0.148 r_symmetry_vdw_refined 0.134 r_nbtor_other 0.087 r_chiral_restr 0.082 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5478 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 32
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXD phasing autoSHARP phasing REFMAC refinement