☰ Navigation Tabs
3D structure of CotA incubated with sodium azide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GSK PDB ENTRY 1GSK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 pH 5.50
Crystal Properties Matthews coefficient Solvent content 3.51 64.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.831 α = 90 b = 101.831 β = 90 c = 137.36 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 44 99.9 0.06 8.98 4.3 42452 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.5 0.22 3.3 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GSK 2.2 44.28 40273 2139 99.9 0.162 0.16 0.1585 0.197 0.1893 RANDOM 22.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.058 r_scangle_it 4.452 r_scbond_it 2.695 r_mcangle_it 1.622 r_angle_refined_deg 1.549 r_mcbond_it 0.876 r_angle_other_deg 0.864 r_symmetry_vdw_other 0.362 r_nbd_other 0.259 r_nbd_refined 0.201
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.058 r_scangle_it 4.452 r_scbond_it 2.695 r_mcangle_it 1.622 r_angle_refined_deg 1.549 r_mcbond_it 0.876 r_angle_other_deg 0.864 r_symmetry_vdw_other 0.362 r_nbd_other 0.259 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.096 r_nbtor_other 0.087 r_symmetry_vdw_refined 0.055 r_bond_refined_d 0.017 r_gen_planes_other 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4045 Nucleic Acid Atoms Solvent Atoms 477 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing