1W7Q
Feglymycin P65 crystal form
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | 8.4 | 0.1 M TRIS/TRISHCL PH=8.4, 4% PEG8000, pH 8.40 |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.52 | 51.2 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 83.544 | α = 90 |
b = 83.544 | β = 90 |
c = 35.734 | γ = 120 |
Symmetry | |
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Space Group | P 65 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | BRUKER-NONIUS | OSMIC BLUE | 2002-10-10 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | ROTATING ANODE | MACSCIENCE M06XCE |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 1.1 | 72.35 | 100 | 0.04 | 25.31 | 9.97 | 57985 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1 | 1.1 | 1.2 | 100 | 0.45 | 3.06 | 4.64 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free Selection Details | Mean Isotropic B | |||||
X-RAY DIFFRACTION | DIRECT METHODS | FREE R-VALUE | 1.1 | 72.35 | 57958 | 2901 | 100 | 0.1692 | 0.1689 | 0.17 | 0.195 | THIN SHELLS |
Coordinate Error | ||
---|---|---|
Structure Solution Method | Refinement High Resolution | Refinement Low Resolution |
13 | 646 | 1026 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
s_from_restr_planes | 0.292 |
s_zero_chiral_vol | 0.111 |
s_non_zero_chiral_vol | 0.105 |
s_approx_iso_adps | 0.092 |
s_similar_adp_cmpnt | 0.063 |
s_angle_d | 0.045 |
s_anti_bump_dis_restr | 0.026 |
s_bond_d | 0.022 |
s_rigid_bond_adp_cmpnt | 0.006 |
s_similar_dist |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 828 |
Nucleic Acid Atoms | |
Solvent Atoms | 77 |
Heterogen Atoms | 122 |
Software
Software | |
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Software Name | Purpose |
SHELXL-97 | refinement |
SAINT | data reduction |
SADABS | data scaling |
SHELXD | phasing |