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Human death-associated kinase DRP-1, mutant S308D d40
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SXO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 295 PEG, sodium acetate, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.65 53.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.19 α = 90 b = 143.29 β = 90 c = 255.72 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.6 20 99.2 0.173 7.6 4.8 37261 37261 -3 -3 63
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.6 3.7 99.9 0.434 3.6 4.7 2894
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1SXO 3.6 20 -3 37254 37254 1864 99.97 0.2773 0.2773 0.27633 0.2658 0.29577 0.2863 RANDOM 130.433
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 4.76 -4.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.436 r_dihedral_angle_3_deg 16.596 r_dihedral_angle_4_deg 7.408 r_dihedral_angle_1_deg 4.742 r_angle_refined_deg 0.874 r_angle_other_deg 0.7 r_symmetry_vdw_other 0.294 r_symmetry_hbond_refined 0.25 r_nbd_other 0.2 r_nbd_refined 0.176
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.436 r_dihedral_angle_3_deg 16.596 r_dihedral_angle_4_deg 7.408 r_dihedral_angle_1_deg 4.742 r_angle_refined_deg 0.874 r_angle_other_deg 0.7 r_symmetry_vdw_other 0.294 r_symmetry_hbond_refined 0.25 r_nbd_other 0.2 r_nbd_refined 0.176 r_symmetry_vdw_refined 0.17 r_xyhbond_nbd_refined 0.122 r_nbtor_other 0.082 r_chiral_restr 0.052 r_bond_refined_d 0.006 r_bond_other_d 0.002 r_gen_planes_refined 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19951 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing