☰ Navigation Tabs
Crystal structure of chitinase C from Streptomyces griseus HUT6037
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 Sodium chloride, Sodium acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.1 59.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.85 α = 90 b = 127.85 β = 90 c = 127.85 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 42.64 96.2 0.041 0.041 14 4.5 24823 24823 46.661
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.51 75.5 0.125 0.125 5.2 1.7 318
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.45 35.47 23560 23560 1262 100 0.17494 0.17494 0.17238 0.22272 RANDOM 32.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.63 r_dihedral_angle_4_deg 17.801 r_dihedral_angle_3_deg 13.828 r_dihedral_angle_1_deg 6.08 r_scangle_it 2.917 r_scbond_it 1.945 r_angle_refined_deg 1.646 r_mcangle_it 1.265 r_mcbond_it 0.988 r_angle_other_deg 0.901
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.63 r_dihedral_angle_4_deg 17.801 r_dihedral_angle_3_deg 13.828 r_dihedral_angle_1_deg 6.08 r_scangle_it 2.917 r_scbond_it 1.945 r_angle_refined_deg 1.646 r_mcangle_it 1.265 r_mcbond_it 0.988 r_angle_other_deg 0.901 r_nbd_refined 0.226 r_nbtor_refined 0.199 r_nbd_other 0.181 r_mcbond_other 0.181 r_symmetry_vdw_other 0.16 r_xyhbond_nbd_refined 0.158 r_symmetry_vdw_refined 0.149 r_chiral_restr 0.096 r_nbtor_other 0.089 r_symmetry_hbond_refined 0.079 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3541 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MLPHARE phasing