1XE1
Hypothetical Protein From Pyrococcus Furiosus Pfu-880080-001
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | modified microbatch | 6.5 | 293 | 1.6M magnesium sulfate, 0.1M MES, pH 6.5, modified microbatch, temperature 293K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
3.25 | 62.1 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 88.625 | α = 90 |
b = 88.625 | β = 90 |
c = 73.267 | γ = 120 |
Symmetry | |
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Space Group | P 65 2 2 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | MARMOSAIC 225 mm CCD | 2004-03-20 | SAD |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | APS BEAMLINE 22-ID | 1.000 | APS | 22-ID |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 2 | 50 | 93.7 | 0.068 | 11239 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1 | 2 | 2.07 | 57.4 | 0.443 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | Mean Isotropic B | |||||||
X-RAY DIFFRACTION | SAD | 2 | 76.696 | 11213 | 525 | 93.582 | 0.22219 | 0.2213 | 0.2209 | 0.2397 | 0.2435 | 41.428 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[2][2] | Anisotropic B[3][3] | |||
0.078 | 0.039 | 0.078 | -0.117 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_dihedral_angle_2_deg | 39.922 |
r_dihedral_angle_4_deg | 22.522 |
r_dihedral_angle_3_deg | 18.68 |
r_dihedral_angle_1_deg | 6.124 |
r_scangle_it | 5.394 |
r_mcangle_it | 4.022 |
r_scbond_it | 3.356 |
r_mcbond_it | 2.5 |
r_angle_refined_deg | 1.465 |
r_nbtor_refined | 0.302 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 652 |
Nucleic Acid Atoms | |
Solvent Atoms | 28 |
Heterogen Atoms | 5 |
Software
Software | |
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Software Name | Purpose |
SOLVE | phasing |
RESOLVE | phasing |
DENZO | data reduction |
SCALEPACK | data scaling |
PDB_EXTRACT | data extraction |
MAR345 | data collection |
REFMAC | refinement |