1XFN
NMR structure of the ground state of the photoactive yellow protein lacking the N-terminal part
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | HNCA | 1mM Delta25-PYP, 15N-13C, 50mM phosphate buffer | 90% H2O/10% D2O | 50mM phosphate buffer | 7 | ambient | 293 | |
2 | CBCA(CO)NH | 1mM Delta25-PYP, 15N-13C, 50mM phosphate buffer | 90% H2O/10% D2O | 50mM phosphate buffer | 7 | ambient | 293 | |
3 | 3D 15N TOCSY-HSQC | 1mM Delta25-PYP 15N, 50mM phosphate buffer | 90% H2O/10% D2O | 50mM phosphate buffer | 7 | ambient | 293 | |
4 | 3D_15N-separated_NOESY | 1mM Delta25-PYP 15N, 50mM phosphate buffer | 90% H2O/10% D2O | 50mM phosphate buffer | 7 | ambient | 293 | |
5 | 2D NOESY | 1mM Delta25-PYP 15N, 50mM phosphate buffer | 90% H2O/10% D2O | 50mM phosphate buffer | 7 | ambient | 293 | |
6 | 2D TOCSY | 1mM Delta25-PYP 15N, 50mM phosphate buffer | 90% H2O/10% D2O | 50mM phosphate buffer | 7 | ambient | 293 | |
7 | HNCO | 1mM Delta25-PYP, 15N-13C, 50mM phosphate buffer | 90% H2O/10% D2O | 50mM phosphate buffer | 7 | ambient | 293 | |
8 | HNACB | 1mM Delta25-PYP, 15N-13C, 50mM phosphate buffer | 90% H2O/10% D2O | 50mM phosphate buffer | 7 | ambient | 293 | |
9 | 13C filtered 2D NOESY | 1mM Delta25-PYP, 15N-13C, 50mM phosphate buffer | 90% H2O/10% D2O | 50mM phosphate buffer | 7 | ambient | 293 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
2 | Bruker | AVANCE | 500 |
3 | Bruker | AVANCE | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, simulated annealing | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.1 | bruker |
2 | processing | NMRPipe | johnsin | |
3 | structure solution | CNS | 1.2 | Brunger |
4 | refinement | CNS | 1.2 | Brunger |
5 | data analysis | NMRView | 5.0.4 | Delaglio |