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Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 291 25w/v% PEG 3350, 0.15M potassium nitrate, modified microbatch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.13 42.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.688 α = 90 b = 81.639 β = 90 c = 90.581 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 50 98.1 0.058 40388
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.95 93.7 0.159
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.88 37.22 40282 2025 97.6 0.21 0.207 0.2167 0.261 0.2664 THIN SHELLS 22.03
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.098 0.048 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.58 r_dihedral_angle_4_deg 15.705 r_dihedral_angle_3_deg 13.527 r_dihedral_angle_1_deg 5.477 r_scangle_it 3.735 r_angle_other_deg 3.656 r_mcangle_it 3.329 r_scbond_it 2.471 r_mcbond_it 2.268 r_angle_refined_deg 1.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.58 r_dihedral_angle_4_deg 15.705 r_dihedral_angle_3_deg 13.527 r_dihedral_angle_1_deg 5.477 r_scangle_it 3.735 r_angle_other_deg 3.656 r_mcangle_it 3.329 r_scbond_it 2.471 r_mcbond_it 2.268 r_angle_refined_deg 1.292 r_symmetry_vdw_other 0.362 r_symmetry_vdw_refined 0.227 r_nbd_other 0.214 r_nbd_refined 0.211 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.142 r_nbtor_other 0.106 r_chiral_restr 0.082 r_symmetry_hbond_refined 0.045 r_bond_refined_d 0.015 r_gen_planes_other 0.01 r_gen_planes_refined 0.007 r_bond_other_d r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3876 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection PHASER phasing