Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
METHIONINE AMINOPEPTIDASE FROM HYPERTHERMOPHILE PYROCOCCUS FURIOSUS
X-RAY DIFFRACTION
Starting Model(s)
Initial Refinement Model(s)
Type
Source
Accession Code
Details
experimental model
Other
STRUCTURE OF NATIVE MONOCLINIC PFMAP CRYSTAL DETERMINED BY MIR METHOD
Crystallization
Crystalization Experiments
ID
Method
pH
Temperature
Details
1
8.5
PROTEIN SOLUTION CONTAINING 16 MG/ML PFMAP, 2 MM COCL2 AND 30 MM L-METHIONINE IN 20 MM POTASSIUM ACETATE AT PH4.5 WAS MIXED WITH EQUAL AMOUNT OF RESERVOIR SOLUTION CONTAINING 20% ETHANOL IN 0.1 M TRIS BUFFER AT PH 8.5, THEN EQUILIBRATED AGAINST RESERVOIR SOLUTION. OBTAINED CRYSTALS WERE TRANSFORMED TO LOW-HUMIDITY FORM BY CONTROLLING THE RELATIVE HUMIDITY USING THE SATURATED SALT SOLUTIONS (AMMONIUM SULFATE AT LAST STAGE).
Crystal Properties
Matthews coefficient
Solvent content
2.22
44.9
Crystal Data
Unit Cell
Length ( Å )
Angle ( ˚ )
a = 51.903
α = 90
b = 83.286
β = 105.87
c = 70.267
γ = 90
Symmetry
Space Group
P 1 21 1
Diffraction
Diffraction Experiment
ID #
Crystal ID
Scattering Type
Data Collection Temperature
Detector
Detector Type
Details
Collection Date
Monochromator
Protocol
1
1
x-ray
289
IMAGE PLATE
MAC Science DIP-2030
MIRRORS
1996-12-18
M
Radiation Source
ID #
Source
Type
Wavelength List
Synchrotron Site
Beamline
1
ROTATING ANODE
Data Collection
Overall
ID #
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
1
1.75
100
84.6
0.075
9.7
3.9
49955
1
Highest Resolution Shell
ID #
Resolution (High)
Resolution (Low)
Percent Possible (All)
Percent Possible (Observed)
R Merge I (Observed)
Mean I Over Sigma (Observed)
Redundancy
Number Unique Reflections (All)
1.75
1.81
62.4
0.361
1.6
Refinement
Statistics
Diffraction ID
Structure Solution Method
Cross Validation method
Starting model
Resolution (High)
Resolution (Low)
Cut-off Sigma (F)
Number Reflections (Observed)
Number Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (Observed)
R-Work (Depositor)
R-Work (DCC)
R-Free (Depositor)
R-Free Selection Details
Mean Isotropic B
X-RAY DIFFRACTION
RIGID-BODY REFINEMENT
THROUGHOUT
STRUCTURE OF NATIVE MONOCLINIC PFMAP CRYSTAL DETERMINED BY MIR METHOD