☰ Navigation Tabs
Divalent cation tolerant protein CUTA from Homo sapiens O60888
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OSC PDB entry 1OSC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 modified microbatch 8.6 291 1.5M potassium hydrogen phosphate, 0.1M TRIS, pH 8.6, modified microbatch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.07 40.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.157 α = 90 b = 89.517 β = 90 c = 125.847 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2003-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.9793 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 0.073 24132
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 26.7 0.32
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1OSC 2.7 32.67 19505 1053 100 0.24664 0.24459 0.2479 0.28316 0.289 RANDOM 52.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.61 -0.48 -4.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.817 r_dihedral_angle_4_deg 20.881 r_dihedral_angle_3_deg 15.455 r_dihedral_angle_1_deg 5.005 r_angle_other_deg 3.69 r_scangle_it 1.467 r_angle_refined_deg 1.048 r_scbond_it 0.781 r_mcangle_it 0.505 r_mcbond_it 0.256
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.817 r_dihedral_angle_4_deg 20.881 r_dihedral_angle_3_deg 15.455 r_dihedral_angle_1_deg 5.005 r_angle_other_deg 3.69 r_scangle_it 1.467 r_angle_refined_deg 1.048 r_scbond_it 0.781 r_mcangle_it 0.505 r_mcbond_it 0.256 r_symmetry_vdw_refined 0.224 r_nbd_other 0.213 r_symmetry_hbond_refined 0.207 r_nbd_refined 0.203 r_nbtor_refined 0.173 r_metal_ion_refined 0.165 r_xyhbond_nbd_refined 0.139 r_symmetry_vdw_other 0.138 r_nbtor_other 0.109 r_chiral_restr 0.06 r_bond_refined_d 0.013 r_gen_planes_other 0.004 r_gen_planes_refined 0.003 r_bond_other_d r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4828 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 3
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection EPMR phasing