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Structure of human Dcps bound to m7GDP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.4 298 PEG3350, KH2PO4, NaCl, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.4 47.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.928 α = 90 b = 105.14 β = 90 c = 138.647 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL40B2 0.9997 SPring-8 BL40B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 32.6 99.9 51115 51097 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 98.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 20 1 48479 48479 2509 98.8 0.216 0.21615 0.21353 0.2228 0.26695 0.2198 RANDOM 19.474
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1 -0.05 1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.797 r_scangle_it 1.851 r_angle_refined_deg 1.337 r_scbond_it 1.045 r_mcangle_it 0.803 r_angle_other_deg 0.781 r_mcbond_it 0.419 r_nbd_other 0.218 r_symmetry_vdw_other 0.218 r_nbd_refined 0.194
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.797 r_scangle_it 1.851 r_angle_refined_deg 1.337 r_scbond_it 1.045 r_mcangle_it 0.803 r_angle_other_deg 0.781 r_mcbond_it 0.419 r_nbd_other 0.218 r_symmetry_vdw_other 0.218 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.166 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.126 r_nbtor_other 0.082 r_chiral_restr 0.074 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9561 Nucleic Acid Atoms Solvent Atoms 419 Heterogen Atoms 128
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing