X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1UOMPDB entry 1UOM

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP9293PEG-550ME, sodium chloride, bicine, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.244

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.114α = 90
b = 156.569β = 90.35
c = 58.962γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2001-08-30MSINGLE WAVELENGTH
21100IMAGE PLATEMAC Science DIP-20302001-07-12
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM1A0.8727ESRFBM1A
2ROTATING ANODEENRAF-NONIUS FR5911.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.051095.20.09522.36.8593325933231.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.052.1289.90.4221.84.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1UOM2.05105597455974299295.290.21320.21320.211010.25425RANDOM41.123
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.99-0.47-1.95-4.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.02
r_scangle_it3.581
r_scbond_it2.252
r_mcangle_it1.693
r_angle_refined_deg1.554
r_mcbond_it0.942
r_angle_other_deg0.88
r_symmetry_hbond_refined0.286
r_symmetry_vdw_other0.27
r_nbd_other0.229
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.02
r_scangle_it3.581
r_scbond_it2.252
r_mcangle_it1.693
r_angle_refined_deg1.554
r_mcbond_it0.942
r_angle_other_deg0.88
r_symmetry_hbond_refined0.286
r_symmetry_vdw_other0.27
r_nbd_other0.229
r_nbd_refined0.219
r_symmetry_vdw_refined0.218
r_xyhbond_nbd_refined0.212
r_chiral_restr0.088
r_nbtor_other0.088
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_gen_planes_other0.006
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7112
Nucleic Acid Atoms
Solvent Atoms374
Heterogen Atoms132

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing