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Conserved hypothetical protein from Clostridium thermocellum Cth-2968
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 291 30 v/v% PEG 400, 0.1M HEPES, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.51 50.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.436 α = 90 b = 80.436 β = 90 c = 137.202 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.969 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 100 0.072 30510
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 100 0.169
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 19.897 26579 825 99.64 0.194 0.19353 0.1925 0.2049 0.2248 0.2357 thin shells 22.273
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.019 -0.009 -0.019 0.028
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.088 r_dihedral_angle_3_deg 13.214 r_dihedral_angle_1_deg 6.47 r_scangle_it 4.093 r_dihedral_angle_4_deg 4.039 r_mcangle_it 3.675 r_scbond_it 2.868 r_mcbond_it 2.657 r_mcangle_other 2.123 r_scangle_other 1.855
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.088 r_dihedral_angle_3_deg 13.214 r_dihedral_angle_1_deg 6.47 r_scangle_it 4.093 r_dihedral_angle_4_deg 4.039 r_mcangle_it 3.675 r_scbond_it 2.868 r_mcbond_it 2.657 r_mcangle_other 2.123 r_scangle_other 1.855 r_angle_refined_deg 1.352 r_scbond_other 0.846 r_angle_other_deg 0.763 r_mcbond_other 0.683 r_nbd_refined 0.192 r_nbtor_refined 0.172 r_symmetry_vdw_other 0.171 r_nbd_other 0.164 r_symmetry_hbond_refined 0.161 r_xyhbond_nbd_refined 0.159 r_nbtor_other 0.085 r_chiral_restr 0.081 r_symmetry_vdw_refined 0.078 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3031 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 17
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection ISAS phasing ARP/wARP model building