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The three-dimensional structure of MntC from Synechocystis 6803
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PSZ PDB entries 1PSZ, 1TOA and 1PQ4 experimental model PDB 1TOA PDB entries 1PSZ, 1TOA and 1PQ4 experimental model PDB 1PQ4 PDB entries 1PSZ, 1TOA and 1PQ4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 PEG 4000, zinc acetate, cacodylate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.01 38.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.553 α = 90 b = 128.553 β = 90 c = 91.05 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-07-23 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.978601, 0.979615, 0.979847, 0.976837 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 30 99.7 0.072 11.8 8.6 19654 18595
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 3 98.5 0.445 2.8 8.5 1889
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT PDB entries 1PSZ, 1TOA and 1PQ4 2.9 8 4 15597 14049 1548 83.9 0.24 0.24 0.234 0.2619 0.289 0.2821 Random 63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5963 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms 3
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXD phasing SHELXE model building CNS refinement