☰ Navigation Tabs
Crystal Structure of CaiB mutant D169A in complex with carnitinyl-CoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XK6 PDB ENTRY 1XK6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 294 1.35M Sodium citrate, 0.1M Tris-Cl (pH 7.0), VAPOR DIFFUSION, temperature 21K
Crystal Properties Matthews coefficient Solvent content 3.59 65.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.627 α = 90 b = 86.627 β = 90 c = 163.863 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.22 50 0.062 19.4 9.4 31626 31586
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.22 2.3 99.8 0.613 5.86 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1XK6 2.4 49.09 25150 23801 1274 99.7 0.20772 0.20537 0.25228 0.3077 RANDOM 48.823
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.04 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.238 r_dihedral_angle_4_deg 17.383 r_dihedral_angle_3_deg 17.379 r_dihedral_angle_1_deg 5.844 r_scangle_it 2.289 r_scbond_it 1.429 r_angle_refined_deg 1.371 r_mcangle_it 0.846 r_mcbond_it 0.494 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.238 r_dihedral_angle_4_deg 17.383 r_dihedral_angle_3_deg 17.379 r_dihedral_angle_1_deg 5.844 r_scangle_it 2.289 r_scbond_it 1.429 r_angle_refined_deg 1.371 r_mcangle_it 0.846 r_mcbond_it 0.494 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.221 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3001 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing