X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1GSDpdb entry 1gsd

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.8293PEG4 000, DTT, Tris-HCl, MPD, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.449

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.077α = 90
b = 90.57β = 93.06
c = 51.489γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2003-06-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I7110.996MAX III711

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.856799.9387142
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.851.92100

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 1gsd1.85673871434854386099.870.169440.164150.21809RANDOM22.978
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.021.140.4-0.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.668
r_scangle_it4.01
r_scbond_it2.443
r_mcangle_it1.661
r_angle_refined_deg1.51
r_mcbond_it0.952
r_angle_other_deg0.902
r_nbd_other0.236
r_nbd_refined0.221
r_symmetry_hbond_refined0.176
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.668
r_scangle_it4.01
r_scbond_it2.443
r_mcangle_it1.661
r_angle_refined_deg1.51
r_mcbond_it0.952
r_angle_other_deg0.902
r_nbd_other0.236
r_nbd_refined0.221
r_symmetry_hbond_refined0.176
r_xyhbond_nbd_refined0.159
r_symmetry_vdw_other0.15
r_symmetry_vdw_refined0.102
r_chiral_restr0.096
r_nbtor_other0.085
r_bond_refined_d0.016
r_gen_planes_other0.009
r_gen_planes_refined0.008
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3574
Nucleic Acid Atoms
Solvent Atoms448
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
CCP4data scaling
CNSphasing