☰ Navigation Tabs
Crystal Structure of Cimex Nitrophorin NO Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NTF PDB entry 1NTF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 298 PEG 4000, pH 8.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.84 32.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.065 α = 90 b = 41.477 β = 94.55 c = 65.346 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV osmic mirrors 2002-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 64.55 98.7 0.043 20 3.3 24549 24549 24.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 98.4 0.24 2.6 2.7 6875
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB entry 1NTF 1.75 64.55 24549 24549 1255 98.54 0.1696 0.1696 0.16766 0.1773 0.20828 0.1696 RANDOM 27.019
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.97 0.05 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.833 r_scangle_it 4.885 r_scbond_it 3.093 r_mcangle_it 2.386 r_angle_refined_deg 1.831 r_mcbond_it 1.383 r_angle_other_deg 0.912 r_nbd_other 0.251 r_nbd_refined 0.219 r_symmetry_vdw_other 0.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.833 r_scangle_it 4.885 r_scbond_it 3.093 r_mcangle_it 2.386 r_angle_refined_deg 1.831 r_mcbond_it 1.383 r_angle_other_deg 0.912 r_nbd_other 0.251 r_nbd_refined 0.219 r_symmetry_vdw_other 0.205 r_xyhbond_nbd_refined 0.187 r_symmetry_hbond_refined 0.168 r_symmetry_vdw_refined 0.13 r_chiral_restr 0.116 r_nbtor_other 0.087 r_bond_refined_d 0.023 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2227 Nucleic Acid Atoms Solvent Atoms 237 Heterogen Atoms 55
Software Software Software Name Purpose CrystalClear data collection d*TREK data reduction MLPHARE phasing REFMAC refinement CrystalClear data reduction d*TREK data scaling