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Crystal structure of VEGFR2 in complex with a 2-anilino-5-aryl-oxazole inhibitor
Crystallization Crystal Properties Matthews coefficient Solvent content 2.06 40.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.544 α = 90 b = 94.333 β = 90 c = 96.767 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 99.5 0.045 42.9 6.79 20768 20768 -3 36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 99.1 0.355 5.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 16.6 20795 19994 675 99.67 0.19385 0.19248 0.1995 0.23588 RANDOM 35.596
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.65 -0.02 -1.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.1 r_dihedral_angle_4_deg 23.264 r_dihedral_angle_3_deg 15.055 r_dihedral_angle_1_deg 6.62 r_scangle_it 3.213 r_scbond_it 2.256 r_mcangle_it 1.545 r_angle_refined_deg 1.539 r_mcbond_it 1.362 r_angle_other_deg 0.981
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.1 r_dihedral_angle_4_deg 23.264 r_dihedral_angle_3_deg 15.055 r_dihedral_angle_1_deg 6.62 r_scangle_it 3.213 r_scbond_it 2.256 r_mcangle_it 1.545 r_angle_refined_deg 1.539 r_mcbond_it 1.362 r_angle_other_deg 0.981 r_symmetry_hbond_refined 0.499 r_mcbond_other 0.226 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.192 r_nbd_other 0.184 r_nbtor_refined 0.183 r_symmetry_vdw_other 0.161 r_chiral_restr 0.096 r_nbtor_other 0.084 r_symmetry_vdw_refined 0.037 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_gen_planes_other 0.007 r_bond_other_d 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2135 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement MAR345 data collection SCALEPACK data scaling AMoRE phasing