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Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 modified microbatch 291 0.3M sodium thiocyanate, 35% w/v PEG 3350, modified microbatch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.1 41.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.146 α = 90 b = 79.146 β = 90 c = 36.402 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2004-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.9791 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 50 83.1 0.054 14818
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.59 1.65 20.1 0.371
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAS THROUGHOUT 1.701 68.519 13777 488 94.942 0.223 0.22334 0.2226 0.2211 0.245 0.2451 RANDOM 24.266
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.953 -0.476 -0.953 1.429
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.96 r_dihedral_angle_4_deg 17.365 r_dihedral_angle_3_deg 12.098 r_dihedral_angle_1_deg 5.277 r_scangle_it 3.297 r_mcangle_it 2.766 r_scbond_it 2.16 r_mcbond_it 1.844 r_angle_refined_deg 1.325 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.96 r_dihedral_angle_4_deg 17.365 r_dihedral_angle_3_deg 12.098 r_dihedral_angle_1_deg 5.277 r_scangle_it 3.297 r_mcangle_it 2.766 r_scbond_it 2.16 r_mcbond_it 1.844 r_angle_refined_deg 1.325 r_nbtor_refined 0.3 r_nbd_refined 0.264 r_symmetry_vdw_refined 0.157 r_xyhbond_nbd_refined 0.117 r_chiral_restr 0.074 r_symmetry_hbond_refined 0.045 r_bond_refined_d 0.015 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 886 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 59
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection ISAS phasing ARP/wARP model building