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Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Inactive double mutant with selenomethionine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other partially refined model of a similar construct obtained by combination of MR and MIR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 PEG 5000 MME, TACSIMATE, BIS-TRIS, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.86 56.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.822 α = 90 b = 118.822 β = 90 c = 105.38 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.8031 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.501 46.3 99.9 0.099 17.9 7.26 29259 29259 58.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.501 2.54 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION other THROUGHOUT partially refined model of a similar construct obtained by combination of MR and MIR 2.501 46.3 29259 29259 1514 99.97 0.20136 0.20136 0.19776 0.1959 0.26834 0.2655 RANDOM 43.887
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 0.18 0.35 -0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.035 r_dihedral_angle_3_deg 19.696 r_dihedral_angle_4_deg 19.37 r_dihedral_angle_1_deg 6.249 r_scangle_it 3.368 r_scbond_it 2.249 r_angle_refined_deg 1.527 r_mcangle_it 1.468 r_mcbond_it 0.936 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.035 r_dihedral_angle_3_deg 19.696 r_dihedral_angle_4_deg 19.37 r_dihedral_angle_1_deg 6.249 r_scangle_it 3.368 r_scbond_it 2.249 r_angle_refined_deg 1.527 r_mcangle_it 1.468 r_mcbond_it 0.936 r_nbtor_refined 0.318 r_nbd_refined 0.232 r_symmetry_hbond_refined 0.187 r_symmetry_vdw_refined 0.17 r_xyhbond_nbd_refined 0.167 r_chiral_restr 0.103 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4913 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing MLPHARE phasing REFMAC refinement