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Crystal structure of Plasmodium falciparum FabZ at 2.1 A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 289 PEG 8000, cacodylate, ammonium sulfate, glycerol, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.5 50.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.604 α = 90 b = 127.49 β = 90 c = 173.673 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Sagitally focused Si(111) 2003-06-25 M SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE MARRESEARCH Osmics Mirrors 2002-04-22 M SINGLE WAVELENGTH 3 1 x-ray 100 IMAGE PLATE MARRESEARCH Osmics Mirrors 2002-08-20 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0715 SLS X06SA 2 ROTATING ANODE ENRAF-NONIUS FR591 1.5418 3 ROTATING ANODE ENRAF-NONIUS FR591 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 2.09 40 99.6 0.1 10.9 7.3 59472 59472 -3 55.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2,3 2.09 2.15 100 0.83 2.4 7 4802
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.09 87.71 56487 56487 2984 99.6 0.177 0.177 0.174 0.2378 0.222 0.2697 RANDOM 60.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.26 -0.09 1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.402 r_dihedral_angle_3_deg 16.361 r_dihedral_angle_4_deg 14.396 r_dihedral_angle_1_deg 6.785 r_scangle_it 6.135 r_scbond_it 4.832 r_mcangle_it 3.017 r_mcbond_it 2.439 r_angle_refined_deg 1.374 r_angle_other_deg 0.786
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.402 r_dihedral_angle_3_deg 16.361 r_dihedral_angle_4_deg 14.396 r_dihedral_angle_1_deg 6.785 r_scangle_it 6.135 r_scbond_it 4.832 r_mcangle_it 3.017 r_mcbond_it 2.439 r_angle_refined_deg 1.374 r_angle_other_deg 0.786 r_mcbond_other 0.628 r_symmetry_hbond_refined 0.263 r_symmetry_vdw_other 0.198 r_nbd_refined 0.191 r_nbd_other 0.171 r_xyhbond_nbd_refined 0.144 r_symmetry_vdw_refined 0.128 r_xyhbond_nbd_other 0.116 r_chiral_restr 0.084 r_nbtor_other 0.084 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbtor_refined r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6401 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling SHARP phasing