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X-ray structure of alkaline phosphatase from human placenta in complex with 5'-AMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 295 PEG, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.74 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.022 α = 90 b = 113.894 β = 90 c = 106.594 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 4 2001-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.98 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 99 77 0.083 48000 37407
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 76.8 0.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.9 14.96 37403 35450 1869 100 0.1534 0.1534 0.15108 0.1603 0.19703 0.2031 RANDOM 17.303
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.451 r_dihedral_angle_4_deg 18 r_dihedral_angle_3_deg 13.959 r_dihedral_angle_1_deg 6.53 r_scangle_it 2.45 r_scbond_it 1.567 r_angle_refined_deg 1.337 r_mcangle_it 0.978 r_angle_other_deg 0.843 r_mcbond_it 0.672
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.451 r_dihedral_angle_4_deg 18 r_dihedral_angle_3_deg 13.959 r_dihedral_angle_1_deg 6.53 r_scangle_it 2.45 r_scbond_it 1.567 r_angle_refined_deg 1.337 r_mcangle_it 0.978 r_angle_other_deg 0.843 r_mcbond_it 0.672 r_symmetry_vdw_other 0.247 r_symmetry_hbond_refined 0.227 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.199 r_nbd_other 0.191 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.167 r_mcbond_other 0.139 r_nbtor_other 0.084 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_metal_ion_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3677 Nucleic Acid Atoms Solvent Atoms 710 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling FFT phasing