X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.529320% PEG-300, 5% PEG-8000,10% glycerol 0.1M Tris, pH 8.5, vapor diffusion,sitting drop, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.754.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.995α = 90
b = 102.995β = 90
c = 71.441γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC2004-07-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.31.0ALS5.0.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.972.7493.70.0532.92814333956
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.92.0393.278.11.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.972.742814328143150796.090.2220.2220.220.275RANDOM50.724
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.351.35-2.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.888
r_dihedral_angle_3_deg18.396
r_dihedral_angle_4_deg15.731
r_scangle_it6.357
r_dihedral_angle_1_deg6.112
r_scbond_it5.243
r_mcangle_it2.483
r_mcbond_it1.724
r_angle_refined_deg1.574
r_angle_other_deg1.099
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.888
r_dihedral_angle_3_deg18.396
r_dihedral_angle_4_deg15.731
r_scangle_it6.357
r_dihedral_angle_1_deg6.112
r_scbond_it5.243
r_mcangle_it2.483
r_mcbond_it1.724
r_angle_refined_deg1.574
r_angle_other_deg1.099
r_symmetry_hbond_refined0.448
r_nbd_refined0.217
r_mcbond_other0.216
r_symmetry_vdw_other0.194
r_xyhbond_nbd_refined0.192
r_nbd_other0.184
r_nbtor_refined0.183
r_xyhbond_nbd_other0.157
r_chiral_restr0.116
r_symmetry_vdw_refined0.1
r_nbtor_other0.089
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2461
Nucleic Acid Atoms
Solvent Atoms115
Heterogen Atoms24

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction