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Crystal structure of hSET8 in ternary complex with H4 peptide (16-24) and AdoHcy
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 pentaerythritol ethoxylate, ammonium sulfate, Bis-Tris, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.35 47.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.96 α = 89.22 b = 45.775 β = 87.07 c = 94.435 γ = 90.72
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD MARRESEARCH 2004-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 32-ID 0.9686, 0.9792, 0.9791 APS 32-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 22 32 122425 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.5 34
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD, MOLECULAR REPLACEMENT THROUGHOUT 1.45 19.63 2 122425 117760 6198 100 0.206 0.17073 0.16924 0.1755 0.19902 0.2041 RANDOM 16.084
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.03 -0.02 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.573 r_dihedral_angle_4_deg 15.9 r_dihedral_angle_3_deg 11.594 r_dihedral_angle_1_deg 6.092 r_sphericity_free 4.016 r_scangle_it 3.174 r_sphericity_bonded 2.54 r_scbond_it 2.162 r_mcangle_it 1.518 r_angle_refined_deg 1.278
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.573 r_dihedral_angle_4_deg 15.9 r_dihedral_angle_3_deg 11.594 r_dihedral_angle_1_deg 6.092 r_sphericity_free 4.016 r_scangle_it 3.174 r_sphericity_bonded 2.54 r_scbond_it 2.162 r_mcangle_it 1.518 r_angle_refined_deg 1.278 r_rigid_bond_restr 1.228 r_mcbond_it 0.986 r_nbtor_refined 0.304 r_nbd_refined 0.191 r_symmetry_vdw_refined 0.165 r_xyhbond_nbd_refined 0.115 r_symmetry_hbond_refined 0.096 r_chiral_restr 0.085 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5434 Nucleic Acid Atoms Solvent Atoms 1007 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling SHARP phasing