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Human Adenine Phosphoribosyltransferase in Apo and AMP Complexed Forms
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 15.0 % (V/V) glycerol, 25.5 % (w/V) polyethylene glycol 4000, 0.17 mol/L sodium acetate and 0.085 mol/L Tris-HCl pH 8.5 , VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.06 39.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.511 α = 90 b = 49.252 β = 90 c = 140.105 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 28.52 20179 20179
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.05 28.52 19146 1032 94.1 0.15436 0.15436 0.15064 0.165 0.22514 RANDOM 27.082
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.24 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.104 r_dihedral_angle_4_deg 20.205 r_dihedral_angle_3_deg 16.617 r_dihedral_angle_1_deg 6.526 r_scangle_it 3.404 r_scbond_it 2.338 r_angle_refined_deg 1.793 r_mcangle_it 1.455 r_mcbond_it 1.007 r_angle_other_deg 0.965
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.104 r_dihedral_angle_4_deg 20.205 r_dihedral_angle_3_deg 16.617 r_dihedral_angle_1_deg 6.526 r_scangle_it 3.404 r_scbond_it 2.338 r_angle_refined_deg 1.793 r_mcangle_it 1.455 r_mcbond_it 1.007 r_angle_other_deg 0.965 r_symmetry_vdw_other 0.3 r_symmetry_hbond_refined 0.277 r_mcbond_other 0.233 r_symmetry_vdw_refined 0.22 r_nbd_refined 0.2 r_xyhbond_nbd_refined 0.196 r_nbd_other 0.181 r_nbtor_refined 0.169 r_chiral_restr 0.107 r_nbtor_other 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_xyhbond_nbd_other 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2733 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement