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Structure of the third KH domain of hnRNP K in complex with 15-mer ssDNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 294 PEG 8000, SODIUM ACETATE, MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2 38.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.008 α = 90 b = 54.008 β = 90 c = 149.656 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.939 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 46.6 97.5 0.068 14.3 4.1 11572 11572
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 84.5 0.33 3.3 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 20 10975 10975 559 97.35 0.21315 0.21315 0.20972 0.2161 0.28279 0.217 RANDOM 53.216
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.32 1.16 2.32 -3.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.262 r_dihedral_angle_4_deg 22.196 r_dihedral_angle_3_deg 20.347 r_dihedral_angle_1_deg 8.193 r_scangle_it 3.847 r_scbond_it 2.554 r_angle_refined_deg 2.058 r_mcangle_it 1.427 r_mcbond_it 0.828 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.262 r_dihedral_angle_4_deg 22.196 r_dihedral_angle_3_deg 20.347 r_dihedral_angle_1_deg 8.193 r_scangle_it 3.847 r_scbond_it 2.554 r_angle_refined_deg 2.058 r_mcangle_it 1.427 r_mcbond_it 0.828 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.25 r_nbd_refined 0.238 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.132 r_bond_refined_d 0.021 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1622 Nucleic Acid Atoms 153 Solvent Atoms 80 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing