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Crystal structure of sulX in complex with FMN and sulfachloropyridazine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 298 24% PEG 500, 1.2 mM Zinc sulfate, 0.1 M MES pH6.5
Crystal Properties Matthews coefficient Solvent content 3.88 68.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.125 α = 90 b = 133.125 β = 90 c = 139.285 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2025-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL18U1 1 SSRF BL18U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.9 0.976 35.9 38 20374
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 0.931 2.33
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.71 32 19223 1040 99.46 0.19989 0.19614 0.1984 0.27038 0.2632 RANDOM 92.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.34 1.17 2.34 -7.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.817 r_dihedral_angle_4_deg 20.451 r_dihedral_angle_3_deg 17.571 r_long_range_B_other 13.614 r_long_range_B_refined 13.613 r_scangle_other 12.101 r_mcangle_other 10.692 r_mcangle_it 10.689 r_scbond_other 9.183 r_scbond_it 9.182
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.817 r_dihedral_angle_4_deg 20.451 r_dihedral_angle_3_deg 17.571 r_long_range_B_other 13.614 r_long_range_B_refined 13.613 r_scangle_other 12.101 r_mcangle_other 10.692 r_mcangle_it 10.689 r_scbond_other 9.183 r_scbond_it 9.182 r_mcbond_it 8.512 r_mcbond_other 8.505 r_dihedral_angle_1_deg 6.748 r_angle_refined_deg 1.7 r_angle_other_deg 1.307 r_chiral_restr 0.069 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3017 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms 79
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling PHASER phasing