2A3Z

Ternary complex of the WH2 domain of WASP with Actin-DNAse I


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1ATNPDB ENTRY 1atn

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.2293sodium formate, PEG2000 MME, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.549.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 153.27α = 90
b = 41.798β = 108.68
c = 119.418γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-06-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.0APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.07840.199.70.07920.26.94385342018
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.0782.1497.30.3793.44.44189

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1atn2.07840.124385337834418495.80.159070.153350.2103RANDOM33.191
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.992.281.131.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.022
r_dihedral_angle_4_deg22.5
r_dihedral_angle_3_deg16.455
r_dihedral_angle_1_deg6.134
r_scangle_it4.329
r_scbond_it2.982
r_angle_refined_deg1.847
r_mcangle_it1.653
r_mcbond_it1.12
r_nbtor_refined0.313
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.022
r_dihedral_angle_4_deg22.5
r_dihedral_angle_3_deg16.455
r_dihedral_angle_1_deg6.134
r_scangle_it4.329
r_scbond_it2.982
r_angle_refined_deg1.847
r_mcangle_it1.653
r_mcbond_it1.12
r_nbtor_refined0.313
r_nbd_refined0.209
r_symmetry_hbond_refined0.185
r_xyhbond_nbd_refined0.168
r_symmetry_vdw_refined0.165
r_chiral_restr0.133
r_metal_ion_refined0.073
r_bond_refined_d0.015
r_gen_planes_refined0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5003
Nucleic Acid Atoms
Solvent Atoms395
Heterogen Atoms83

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
AMoREphasing