☰ Navigation Tabs
Dual modes of modification of Hepatitis A virus 3C protease by a serine derived beta-lactone: selective crytstallization and high resolution structure of the His102 adduct
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 297 PEG 8000, Glycerol, Tris-HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.1 40.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.914 α = 90 b = 56.072 β = 90 c = 81.293 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.115889 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 46.19 97.6 0.052 29065 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.63 95.8 0.343 1.6 4088
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 10 28861 27436 1425 97.14 0.17905 0.17905 0.17808 0.1857 0.19759 0.1814 RANDOM 19.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.05 -0.53 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.491 r_dihedral_angle_4_deg 20.542 r_dihedral_angle_3_deg 12.371 r_dihedral_angle_1_deg 6.05 r_scangle_it 3.38 r_sphericity_free 2.968 r_sphericity_bonded 2.575 r_scbond_it 2.206 r_mcangle_it 1.562 r_rigid_bond_restr 1.347
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.491 r_dihedral_angle_4_deg 20.542 r_dihedral_angle_3_deg 12.371 r_dihedral_angle_1_deg 6.05 r_scangle_it 3.38 r_sphericity_free 2.968 r_sphericity_bonded 2.575 r_scbond_it 2.206 r_mcangle_it 1.562 r_rigid_bond_restr 1.347 r_angle_refined_deg 1.192 r_mcbond_it 1.068 r_nbtor_refined 0.309 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.169 r_symmetry_hbond_refined 0.135 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1697 Nucleic Acid Atoms Solvent Atoms 258 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection CCP4 data scaling CNS phasing